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Linking to iHOP via a gene DB-identifier (e.g. UniProt or LocusLink)
Query url syntax:
http://www.ihop-net.org/UniPub/iHOP/in?dbrefs_1=&syns_1=[&ncbi_tax_id_1=][&dbrefs_2=&syns_2=[&ncbi_tax_id_2=]][&focus=][&debug=]
Accepted parameters are:
| Name | Format | Values | Description |
| dbrefs_1 | String|String,String|String,... |
| DB-ID/value pairs, e.g. NCBI_GENE__ID|12345 |
| syns_1 | String |
| Synonym, e.g. HUGO gene symbol |
| ncbi_tax_id_1 | Integer |
| Organism Tax Id (NCBI) |
| organism_id_1 | Integer |
| Organism ID (UniPub/iHOP) |
| dbrefs_2 | String|String,String|String,... |
| DB-ID/value pairs, e.g. NCBI_GENE__ID|12345 |
| syns_2 | String |
| Synonym, e.g. HUGO gene symbol |
| ncbi_tax_id_2 | Integer |
| Organism Tax Id (NCBI) |
| organism_id_2 | Integer |
| Organism ID (UniPub/iHOP) |
| focus | Integer | IHOP/GISMO/MGI | Defines the type of information to be retrieved; e.g. 'IHOP' (Leave undefined for automatic selection of optimal result) |
| debug | Integer | 0, 1 | Set 1 for developers to debug query. |
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Bulk downloads
Please note that iHOP is a freely available tool from the academic domain. Not a company! Thus, it is necessary to limit server load and to give preference to individual users.
Bulk downloads may lead to the banning of IP addresses for specific servers or institutions!
Please contact directly with Robert Hoffmann if there should be a scientific reason for bulk downloads.
Thank you for your cooperation!
Examples:
e.g. Search for one gene:
http://www.ihop-net.org/UniPub/iHOP/in?dbrefs_1=NCBI_GENE__ID|852088,UNIPROT__AC|P06782
e.g. Search for one gene in a specific organism:
http://www.ihop-net.org/UniPub/iHOP/in?dbrefs_1=NCBI_GENE__ID|852088,UNIPROT__AC|P06782&ncbi_tax_id_1=4932
e.g. Search for two genes in specific organisms:
http://www.ihop-net.org/UniPub/iHOP/in?dbrefs_1=NCBI_GENE__ID|852088,UNIPROT__AC|P06782&ncbi_tax_id_1=4932&dbrefs_2=NCBI_LOCUSLINK__ID|851592&ncbi_tax_id_2=4932
e.g. Search for one genes in a specific part of iHOP:
http://www.ihop-net.org/UniPub/iHOP/in?dbrefs_1=NCBI_GENE__ID|852088,UNIPROT__AC|P06782&focus=MGI
List of accepted DB_IDs:
| DB-ID | Description |
| ACEDB__ID | AceDB, genome database (ID) |
| ACEVIEW_WORMGENE__SYM | AceView/Wormgenes |
| ECOLI_GENOME_PROJECT__ID | E.coli Genome Project (ID) |
| ENZYME_COMMISSION__EC | Enzyme Commission number (EC number) |
| EUGENES__GN_ID | euGenes (GN ID) |
| FLYBASE__FBAN | FlyBase (FBAN ID) |
| FLYBASE__FBGN | FlyBase (FBGN ID) |
| GDB__ID | Genome Database (GDB ID) |
| GENE_ONTOLOGY__ID | Gene Ontology |
| HGNC__ID | HUGO Gene Nomenclature Comittee |
| INTACT__ID | IntAct (ID) |
| INTERPRO__ID | InterPro (ID) |
| MGI__ID | Mouse Genome Informatics |
| NCBI_DBSNP__ID | NCBI dbSNP |
| NCBI_GENBANK | NCBI, GenBank |
| NCBI_GENBANK__AC | NCBI, GenBank (Accession number) |
| NCBI_GENBANK__GI | NCBI, GenBank (Gene Identifier) |
| NCBI_GENE__ID | NCBI, Gene ID |
| NCBI_OMIM__MIM | Online Mendelian Inheritance in Man (MIM) |
| NCBI_PUBMED__PMID | NCBI, PubMed (PMID) |
| NCBI_PUBMED__UI | NCBI, PubMed (UI) |
| NCBI_REFSEQ__NM | NCBI, RefSeq NM (Mature mRNA) |
| NCBI_REFSEQ__NP | NCBI, RefSeq NP (Protein Product) |
| NCBI_UNIGENE__ID | NCBI, UniGene (ID) |
| PFAM__ID | Pfam, database of protein domains (ID) |
| PIR__ID | Protein Information Resource (ID) |
| PRODOM__ID | PRODOM (ID) |
| PROSITE__ID | PROSITE, Database of protein families and domains (ID) |
| PROTEIN_DATABANK__PDB_ID | Protein Data Bank (PDB) |
| RAT_GENOME_DATABASE__ID | Rat genome database (Object ID) |
| SC_SYSTEMATIC_NAME | Saccharomyces Systematic Gene Name |
| SCOP__ID | Structural Classification of Proteins (ID) |
| SGD__SGDID | Saccharomyces Genome Database (SGD ID) |
| TAIR__GENE_ID | The Arabidopsis Information Resource (GENE_ID) |
| TREMBL__AC | TrEMBL (AC) |
| UNIPROT__AC | UniProt (AC) |
| UNIPUB_ID | UniPub (Document Id) |
| WORMBASE__GENE_ID | WormBase (GENE_ID) |
| WORMBASE__PROTEIN_ID | WormBase (PROTEIN_ID) |
| ZDB__GENE_ID | Zebrafish Database (GENE_ID) |
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